Mir-67

MirGeneDB ID

Sma-Mir-67

Family name

MIR-67 (all species)

Seed

CACAACC

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-67-v1 Aae-Mir-67-v2 Aga-Mir-67-v1 Aga-Mir-67-v2 Agr-Mir-67-v1 Agr-Mir-67-v2 Asu-Mir-67 Bge-Mir-67 Cbr-Mir-67 Cel-Mir-67 Csc-Mir-67-P12 Csc-Mir-67-P13 Cte-Mir-67 Dan-Mir-67-v1 Dan-Mir-67-v2 Dgr-Mir-67 Dlo-Mir-67-P14-v1 Dlo-Mir-67-P14-v2 Dlo-Mir-67-P14-v3 Dlo-Mir-67-P15-v1 Dlo-Mir-67-P15-v2 Dma-Mir-67 Dme-Mir-67-v1 Dme-Mir-67-v2 Dme-Mir-67-v3 Dmo-Mir-67-v1 Dmo-Mir-67-v2 Dpu-Mir-67 Dsi-Mir-67-v1 Dsi-Mir-67-v2 Dsi-Mir-67-v3 Dya-Mir-67-v1 Dya-Mir-67-v2 Dya-Mir-67-v3 Eba-Mir-67-v1 Eba-Mir-67-v2 Efe-Mir-67-P1 Efe-Mir-67-P2 Efe-Mir-67-P3 Egr-Mir-67 Gpa-Mir-67-P12-v1 Gpa-Mir-67-P12-v2 Gpa-Mir-67-P13-v1 Gpa-Mir-67-P13-v2 Gsa-Mir-67 Hme-Mir-67-v1 Hme-Mir-67-v2 Hru-Mir-67 Isc-Mir-67 Lan-Mir-67 Lgi-Mir-67 Lpo-Mir-67-P7 Lpo-Mir-67-P8 Lpo-Mir-67-P9 Lpo-Mir-67-P10 Lpo-Mir-67-P11 Mgi-Mir-67-P4 Mgi-Mir-67-P5 Mgi-Mir-67-P6 Mom-Mir-67-v1 Mom-Mir-67-v2 Npo-Mir-67 Obi-Mir-67 Ofu-Mir-67 Ovu-Mir-67 Pau-Mir-67 Pca-Mir-67 Pcr-Mir-67-v1 Pcr-Mir-67-v2 Pdu-Mir-67 Pve-Mir-67-v1 Pve-Mir-67-v2 Rph-Mir-67-v1 Rph-Mir-67-v2 Sme-Mir-67 Snu-Mir-67 Tca-Mir-67-v1 Tca-Mir-67-v2 Tca-Mir-67-v3 Tur-Mir-67 War-Mir-67-v1 War-Mir-67-v2

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601627.3: 1541977-1542084 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAUAUUCUAUUUGACUAGUCCAAGAAUCUCCUCAUAAAGAAGGUUGUUCGAUGUAUUCAAUAAUGUUAUUCAUUAAAAUAUUAUUAUAACAAUAAUAGUUUUUAAACGAACACAUCACAACCUACUUGAUUGAGGGGCGCUUCGACUUUACACAUCAAUGAAAAGUA

Get precursor sequence

Structure

        10           20        30         40        50        60        70        80    
GAAUAUUCUAUUUGACU---|   C   AAU       UA-   A       UC    UAUUCAAUAAUGUUAUUCAUUAAAAUAUU 
                    AGUC AAG   CUCCUCA   AAG AGGUUGU  GAUG                             \
                    UCAG UUC   GGGGAGU   UUC UCCAACA  CUAC                             A
AUGAAAAGUAACUACACAUU^   C   GC-       UAG   A       --    ACAAGCAAAUUUUUGAUAAUAACAAUAUU 
      160       150       140        130       120         110       100        90

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr

Star sequence

Sma-Mir-67_5p*

mirBase accession

None

Sequence

0- CCUCAUAAAGAAGGUUGUUCGAUG -24

Get sequence

Mature sequence

Sma-Mir-67_3p

mirBase accession

None

Sequence

85- UCACAACCUACUUGAUUGAGGGG -108

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