MirGeneDB ID | Gpa-Mir-67-P13-v1 |
Family name |
MIR-67 (all species) |
Seed |
CACAACC |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
Gpa-Mir-67-P12-v1
Gpa-Mir-67-P12-v2
Gpa-Mir-67-P13-v2
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Orthologues |
Asu-Mir-67
Bge-Mir-67
Cbr-Mir-67
Cel-Mir-67
Csc-Mir-67-P13
Cte-Mir-67
Dgr-Mir-67
Dma-Mir-67
Dpu-Mir-67
Egr-Mir-67
Gsa-Mir-67
Hru-Mir-67
Isc-Mir-67
Lan-Mir-67
Lgi-Mir-67
Npo-Mir-67
Obi-Mir-67
Ofu-Mir-67
Ovu-Mir-67
Pau-Mir-67
Pca-Mir-67
Pdu-Mir-67
Sma-Mir-67
Sme-Mir-67
Snu-Mir-67
Tur-Mir-67
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Node of Origin (locus) |
G. pallidipes
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Node of Origin (family) |
Protostomia
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Genome context (GpalI1) |
Scaffold50: 84500-84565 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGCUUCCUUUAUGGAUUUUCUCUUGCAUUGCCUCACUCAACUUGGGUUUGAUGUGUUAAAAAGUUUCGAUAGCAUCACAACCUCUUUGAGUGAGCUACAGCAAGCUGAAUAAUCAUCAAAACAUCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGCUUCCUUUAUGGAUUU U- AUU-| C CUU - UGUUAAAAA
UC CUUGC GC UCACUCAA GGGUU UGAUG \
AG GAACG CG AGUGAGUU UCCAA ACUAC G
ACUACAAAACUACUAAUA UC ACAU^ - UC- C GAUAGCUUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Star sequence |
Gpa-Mir-67-P13-v1_5p* |
mirBase accession | None |
Sequence |
0- CCUCACUCAACUUGGGUUUGAUG -23
Get sequence
|
Mature sequence |
Gpa-Mir-67-P13-v1_3p |
mirBase accession | None |
Sequence |
44- UCACAACCUCUUUGAGUGAGCU -66
Get sequence
|