MirGeneDB ID | Efe-Mir-67-P3 |
Family name |
MIR-67 (all species) |
Seed |
CACAACC |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-67-P1
Efe-Mir-67-P2
|
Orthologues |
Asu-Mir-67
Bge-Mir-67
Cbr-Mir-67
Cel-Mir-67
Cte-Mir-67
Dgr-Mir-67
Dma-Mir-67
Dpu-Mir-67
Egr-Mir-67
Gsa-Mir-67
Hru-Mir-67
Isc-Mir-67
Lan-Mir-67
Lgi-Mir-67
Npo-Mir-67
Obi-Mir-67
Ofu-Mir-67
Ovu-Mir-67
Pau-Mir-67
Pca-Mir-67
Pdu-Mir-67
Sma-Mir-67
Sme-Mir-67
Snu-Mir-67
Tur-Mir-67
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Protostomia
|
Genome context (Efe_combined) |
Efet.01.73720: 826-889 [+]
|
Precursor (pre-Mir +30nt flank) |
UGAUUGAUUCGUCUUUUCGUCGAGUGGUGGCCUCGUUCCGCUUGAGUUGUGAUGACAGAUUCACUGAUGCAUCACAACCAACGUGAAUGCGGUCAGCACUCAACGACCUUCGCCUCAUCGCCAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGAUUGAUUCGUCUUUU-- C G U -| C A ACAGAUU
CGU GAGUG UGGCC CGUUC CG UUG GUUGUGAUG \
GCA CUCAC ACUGG GUAAG GC AAC CAACACUAC C
CACCGCUACUCCGCUUCCA A G C U^ - - GUAGUCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Efe-Mir-67-P3_5p* |
mirBase accession | None |
Sequence |
0- CCUCGUUCCGCUUGAGUUGUGAUG -24
Get sequence
|
Mature sequence |
Efe-Mir-67-P3_3p |
mirBase accession | None |
Sequence |
41- UCACAACCAACGUGAAUGCGGUC -64
Get sequence
|