MirGeneDB ID | Efe-Mir-67-P1 |
Family name |
MIR-67 (all species) |
Seed |
CACAACC |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-67-P2
Efe-Mir-67-P3
|
Orthologues |
Asu-Mir-67
Bge-Mir-67
Cbr-Mir-67
Cel-Mir-67
Cte-Mir-67
Dgr-Mir-67
Dma-Mir-67
Dpu-Mir-67
Egr-Mir-67
Gsa-Mir-67
Hru-Mir-67
Isc-Mir-67
Lan-Mir-67
Lgi-Mir-67
Npo-Mir-67
Obi-Mir-67
Ofu-Mir-67
Ovu-Mir-67
Pau-Mir-67
Pca-Mir-67
Pdu-Mir-67
Sma-Mir-67
Sme-Mir-67
Snu-Mir-67
Tur-Mir-67
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Protostomia
|
Genome context (Efe_combined) |
Efet.01.111281: 4953-5013 [+]
|
Precursor (pre-Mir +30nt flank) |
AACUUCGUCUUUGAGUAGCCUGUGACACUGCCUUAUUCAGUAGAGUCGUGAUGGUGACAAGAAACUCAUCACAACCUACAUGAAUGGGGUAACGGAACGGGAUGGAACUGCGAAUCGUACA
Get precursor sequence
|
Structure | 10 20 30 40 50
AACUUCGUCUUUGAGUAG-- GACAC -| A C GUGACA
CCUGU UGCCUUAUUCA GUAG GU GUGAUG \
GGGCA AUGGGGUAAGU CAUC CA CACUAC A
ACAUGCUAAGCGUCAAGGUA AGGCA A^ - A UCAAAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Efe-Mir-67-P1_5p* |
mirBase accession | None |
Sequence |
0- CCUUAUUCAGUAGAGUCGUGAUG -23
Get sequence
|
Mature sequence |
Efe-Mir-67-P1_3p |
mirBase accession | None |
Sequence |
38- UCACAACCUACAUGAAUGGGGUA -61
Get sequence
|