MirGeneDB ID | Lpo-Mir-67-P10 |
Family name |
MIR-67 (all species) |
Seed |
CACAACC |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-67-P7
Lpo-Mir-67-P8
Lpo-Mir-67-P9
Lpo-Mir-67-P11
|
Orthologues |
Asu-Mir-67
Bge-Mir-67
Cbr-Mir-67
Cel-Mir-67
Cte-Mir-67
Dgr-Mir-67
Dma-Mir-67
Dpu-Mir-67
Egr-Mir-67
Gsa-Mir-67
Hru-Mir-67
Isc-Mir-67
Lan-Mir-67
Lgi-Mir-67
Npo-Mir-67
Obi-Mir-67
Ofu-Mir-67
Ovu-Mir-67
Pau-Mir-67
Pca-Mir-67
Pdu-Mir-67
Sma-Mir-67
Sme-Mir-67
Snu-Mir-67
Tur-Mir-67
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666205.1: 317883-317946 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUUGCUGUUCUCAUCCCCGACCUGCCUCCCUCACUCAACCUGGCUGUGGUGUGGGGUUUACCCACUCCAUCACAACCUCCUUGAGUGAGUGAAGCGAGCUGGGAAAUUCGACGAGAAGUUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUUGCUGUUCUCAUC--| ACC C C CCU C UGGGGUU
CCCG UGC UC CUCACUCAA GG UGUGGUG U
GGGU GCG AG GAGUGAGUU CC ACACUAC A
CUUUGAAGAGCAGCUUAAA^ CGA A U CCU A CUCACCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-67-P10_5p* |
mirBase accession | None |
Sequence |
0- CCUCACUCAACCUGGCUGUGGUG -23
Get sequence
|
Mature sequence |
Lpo-Mir-67-P10_3p |
mirBase accession | None |
Sequence |
41- UCACAACCUCCUUGAGUGAGUGA -64
Get sequence
|