MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-317

Family name MIR-317 (all species)
Seed GAACACA
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Aae-Mir-317-P8  Aae-Mir-317-P9  Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Csc-Mir-317-P17  Csc-Mir-317-P18  Cte-Mir-317  Dan-Mir-317  Dgr-Mir-317-P3  Dgr-Mir-317-P4  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Efe-Mir-317-P5  Efe-Mir-317-P6  Efe-Mir-317-P7  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lan-Mir-317-P10  Lan-Mir-317-P11  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Lpo-Mir-317-P12  Lpo-Mir-317-P13  Mgi-Mir-317-P1  Mgi-Mir-317-P2  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)		 CM018531.1: 6746836-6746893 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGUUCUUCUAGAAAUUCUCUUGUAAGUGUAGGAUACCAUUCUGUGUUUACAUUUCUAAUCAUGUGAACACAGCUGGUGGUAUCUUUUACUUCUUGAGCCUAGCAGCAUUGUUAGCAG
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Structure
        10           20        30        40          50       
AGGUUCUUCUAGAAAUU---   UUGU     U           --|          UUUC 
                    CUC    AAGUG AGGAUACCAUU  CUGUGUUUACA    U
                    GAG    UUCAU UUCUAUGGUGG  GACACAAGUGU    A
GACGAUUGUUACGACGAUCC   UUC-     U           UC^          ACUA 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-317_5p*
mirBase accessionNone
Sequence 
0- AGGAUACCAUUCUGUGUUUACA -22
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Mature sequence

Rph-Mir-317_3p
mirBase accessionNone
Sequence 
34- UGAACACAGCUGGUGGUAUCUUUU -58
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