MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-317

Family name MIR-317 (all species)
Seed GAACACA
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID
Paralogues
Orthologues Aae-Mir-317-P8  Aae-Mir-317-P9  Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Csc-Mir-317-P17  Csc-Mir-317-P18  Cte-Mir-317  Dan-Mir-317  Dgr-Mir-317-P3  Dgr-Mir-317-P4  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Efe-Mir-317-P5  Efe-Mir-317-P6  Efe-Mir-317-P7  Esc-Mir-317  Gpa-Mir-317  Hru-Mir-317  Isc-Mir-317  Lan-Mir-317-P10  Lan-Mir-317-P11  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Lpo-Mir-317-P12  Lpo-Mir-317-P13  Mgi-Mir-317-P1  Mgi-Mir-317-P2  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Hmel_1)		 HE667979: 27841-27903 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-317)		 Mir-34-P11 HE667979: 380-438 [-] Ensembl
Mir-277 HE667979: 12468-12551 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUAAGAAGAUGACGGGCUACCGAACGACCGGGUGCCACGCUGUGCUCUCUCGGUGUUACUGGUGAGUGAACACAGCUGGUGGUAUCUCAGUUGUUCCUUAGUUCUCCCGCAAUGCAGCUAC
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Structure
        10          20        30         40          50         
AAUUAAGAAGAUGACGG--    CC       C-         --|     C  U  CGGUGU 
                   GCUA  GAACGAC  GGGUGCCAC  GCUGUG UC CU      U
                   UGAU  CUUGUUG  UCUAUGGUG  CGACAC AG GA      A
CAUCGACGUAACGCCCUCU    UC       AC         GU^     A  U  GUGGUC 
 120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-317_5p*
mirBase accessionNone
Sequence 
0- CGGGUGCCACGCUGUGCUCUCU -22
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Mature sequence

Hme-Mir-317_3p
mirBase accessionNone
Sequence 
38- UGAACACAGCUGGUGGUAUCUCAGU -63
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