MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-317-P13

Family name MIR-317 (all species)
Seed GAACACA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-317-P12 
Orthologues Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Cte-Mir-317  Dan-Mir-317  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666308.1: 203107-203166 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAAGUCCCGGAUGAAACUUGGGAGUAGGCCGAGUACCACGCUGAGUUCCCAUAGGUCACGCUUGUGAACACAGCUGGUGGUAUCUCAGUGUAACCCCAAGAUGGACAUCACUCAUCGGA
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Structure
        10          20        30         40          50        
GAAAGUCCCGGAUGAAA--      AG  G  C   -      --|   A    C  UAGGU 
                   CUUGGG  UA GC GAG UACCAC  GCUG GUUC CA     \
                   GAACCC  AU UG CUC AUGGUG  CGAC CAAG GU     C
AGGCUACUCACUACAGGUA      CA  G  A   U      GU^   A    U  UCGCA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-317-P13_5p*
mirBase accessionNone
Sequence 
0- CGAGUACCACGCUGAGUUCCCA -22
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Mature sequence

Lpo-Mir-317-P13_3p
mirBase accessionNone
Sequence 
35- UGAACACAGCUGGUGGUAUCUCAGU -60
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