MirGeneDB 3.0

MirGeneDB ID

Aga-Mir-317

Family name MIR-317 (all species)
Seed GAACACA
Species African malaria mosquito (Anopheles gambiae)
MiRBase ID aga-mir-317
Paralogues
Orthologues Aae-Mir-317-P8  Aae-Mir-317-P9  Agr-Mir-317  Bge-Mir-317  Csc-Mir-317-P17  Csc-Mir-317-P18  Cte-Mir-317  Dan-Mir-317  Dgr-Mir-317-P3  Dgr-Mir-317-P4  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Efe-Mir-317-P5  Efe-Mir-317-P6  Efe-Mir-317-P7  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lan-Mir-317-P10  Lan-Mir-317-P11  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Lpo-Mir-317-P12  Lpo-Mir-317-P13  Mgi-Mir-317-P1  Mgi-Mir-317-P2  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)
NC_064601.1: 28097557-28097624 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-317)
Mir-34 NC_064601.1: 28078231-28078294 [-] Ensembl
Mir-277 NC_064601.1: 28080086-28080155 [-] Ensembl
Mir-317 NC_064601.1: 28097557-28097624 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAACGACAACUGCAAUAACGUCUCUGCCACUGGGAUACUCCUUGUGCUCGCUGUGCAUAUCGAUUCAAACUAGUGAACACAUCUGGUGGUAUCUCAGUGGCCGGGAUGAGAUCCAUCACUGCAGCGCG
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Structure
        10          20        30         40          50        60  
GAACGACAACUGCAAUAA--      U              -  U--|   C     GUGCAUAUC 
                    CGUCUC GCCACUGGGAUACU CC   UGUG UCGCU         \
                    GUAGGG CGGUGACUCUAUGG GG   ACAC AGUGA         G
GCGCGACGUCACUACCUAGA      C              U  UCU^   A     UCAAACUUA 
      120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ab Ab He He Mi Mi Ov Ov Ov
Star sequence

Aga-Mir-317_5p*

mirBase accessionNone
Sequence
0- UGGGAUACUCCUUGUGCUCGCU -22
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Mature sequence

Aga-Mir-317_3p

mirBase accessionMIMAT0001522
Sequence
43- UGAACACAUCUGGUGGUAUCUCAGU -68
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