Mir-317-P1

MirGeneDB ID

Mgi-Mir-317-P1

Family name

MIR-317 (all species)

Seed

GAACACA

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Mgi-Mir-317-P2

Orthologues

Aga-Mir-317 Agr-Mir-317 Bge-Mir-317 Cte-Mir-317 Dan-Mir-317 Dlo-Mir-317 Dma-Mir-317 Dme-Mir-317 Dmo-Mir-317 Dpu-Mir-317 Dsi-Mir-317 Dya-Mir-317 Eba-Mir-317 Esc-Mir-317 Gpa-Mir-317 Hme-Mir-317 Hru-Mir-317 Isc-Mir-317 Lgi-Mir-317 Lhy-Mir-317 Llo-Mir-317 Mom-Mir-317 Npo-Mir-317 Obi-Mir-317 Ofu-Mir-317 Ovu-Mir-317 Pau-Mir-317 Pca-Mir-317 Pdu-Mir-317 Pve-Mir-317 Rph-Mir-317 Snu-Mir-317 Tca-Mir-317 Tur-Mir-317 War-Mir-317

Node of Origin (locus)

C. gigas

Node of Origin (family)

Protostomia

Genome context
(CGI_GCA_000297895.1)

scaffold622: 468076-468134 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AGUUAAGCCAGAGAACAGCUUGUGGAGGGUAAGGUACCAUUGUGUGUUUGUAUAGGAAUACACUAUGAACACAGCUGGUGGUAUCUUGUUCUCUGUGAUGCUUUAGCUACUGCUGCUGC

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Structure

        10          20        30        40          50        
AGUUAAGCCAGAGAACA-  - UG     GG            - -|     UG  UAGGA 
                  GC U  UGGAG  UAAGGUACCAUU G UGUGUU  UA     \
                  CG A  GUCUC  GUUCUAUGGUGG C ACACAA  AU     A
CGUCGUCGUCAUCGAUUU  U GU     UU            U G^     GU  CACAU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Star sequence

Mgi-Mir-317-P1_5p*

mirBase accession

None

Sequence

0- AAGGUACCAUUGUGUGUUUGUA -22

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Mature sequence

Mgi-Mir-317-P1_3p

mirBase accession

None

Sequence

35- UGAACACAGCUGGUGGUAUCUUGU -59

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