MirGeneDB 3.0

MirGeneDB ID

Tur-Mir-317

Family name MIR-317 (all species)
Seed GAACACA
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-317
Paralogues
Orthologues Aae-Mir-317-P8  Aae-Mir-317-P9  Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Csc-Mir-317-P17  Csc-Mir-317-P18  Cte-Mir-317  Dan-Mir-317  Dgr-Mir-317-P3  Dgr-Mir-317-P4  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Efe-Mir-317-P5  Efe-Mir-317-P6  Efe-Mir-317-P7  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lan-Mir-317-P10  Lan-Mir-317-P11  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Lpo-Mir-317-P12  Lpo-Mir-317-P13  Mgi-Mir-317-P1  Mgi-Mir-317-P2  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  War-Mir-317 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587302.1: 4474819-4474887 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-317)
Mir-317 HE587302.1: 4474819-4474887 [+] Ensembl
Mir-34 HE587302.1: 4478347-4478406 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUAAUUAAUGAAAAGGGAAAUGGUUUGCUGGGUACCACGCUGGGCUCACAUCUUAAUUGUUAUUAUAUUGGGUGAACACAGCUGGUGGUAUCUCAGUUAACCUUUCUCAAAUAGCCCCUUGACAAGU
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Structure
        10           20        30         40          50        60  
UGUUAAUUAAUGAAAAG---     U    U    -        --|   GGC    AUCUUAAUUG 
                    GGAAA GGUU GCUG GGUACCAC  GCUG   UCAC          U
                    UCUUU CCAA UGAC CUAUGGUG  CGAC   AGUG          U
UGAACAGUUCCCCGAUAAAC     -    U    U        GU^   ACA    GGUUAUAUUA 
       120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Tur-Mir-317_5p*

mirBase accessionMIMAT0023060
Sequence
0- UGGGUACCACGCUGGGCUCACA -22
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Mature sequence

Tur-Mir-317_3p

mirBase accessionMIMAT0023061
Sequence
44- UGAACACAGCUGGUGGUAUCUCAGU -69
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