MirGeneDB ID | Aae-Mir-317-P8 |
Family name |
MIR-317 (all species) |
Seed |
GAACACA |
Species |
Yellow fever mosquito (Aedes aegypti) |
MiRBase ID |
aae-mir-317-1
|
Paralogues |
Aae-Mir-317-P9
|
Orthologues |
Aga-Mir-317
Agr-Mir-317
Bge-Mir-317
Cte-Mir-317
Dan-Mir-317
Dlo-Mir-317
Dma-Mir-317
Dme-Mir-317
Dmo-Mir-317
Dpu-Mir-317
Dsi-Mir-317
Dya-Mir-317
Eba-Mir-317
Esc-Mir-317
Gpa-Mir-317
Hme-Mir-317
Hru-Mir-317
Isc-Mir-317
Lgi-Mir-317
Lhy-Mir-317
Llo-Mir-317
Mom-Mir-317
Npo-Mir-317
Obi-Mir-317
Ofu-Mir-317
Ovu-Mir-317
Pau-Mir-317
Pca-Mir-317
Pdu-Mir-317
Pve-Mir-317
Rph-Mir-317
Snu-Mir-317
Tca-Mir-317
Tur-Mir-317
War-Mir-317
|
Node of Origin (locus) |
A. aegypti
|
Node of Origin (family) |
Protostomia
|
Genome context (Aaeg_L3) |
supercont1.265: 429465-429527 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCCCGGCGGUGUAGAGGAAUUUCGGCUACCGGGAUACACCCUGUGCUCGCUUUGCAUUCGAAACUAGUGAACACAGCUGGUGGUAUCUCAGUGGCCCUAAUCCGAUCGCAACCCUCCGCCGG
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCCCGGCGGUGUAGAGGAAUUUC-- C - --| C UUGCAU
GGCUAC GGGAUA CACC CUGUG UCGCU U
CCGGUG CUCUAU GUGG GACAC AGUGA C
GGCCGCCUCCCAACGCUAGCCUAAUC A G UC^ A UCAAAG
120 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Aae-Mir-317-P8_5p* |
mirBase accession | None |
Sequence |
0- CGGGAUACACCCUGUGCUCGCU -22
Get sequence
|
Mature sequence |
Aae-Mir-317-P8_3p |
mirBase accession | MIMAT0014224 |
Sequence |
38- UGAACACAGCUGGUGGUAUCUCAGU -63
Get sequence
|