MirGeneDB ID | Pve-Mir-317 |
Family name |
MIR-317 (all species) |
Seed |
GAACACA |
Species |
Vernerds tusk shell (Pictodentalium vernedei) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-317-P8
Aae-Mir-317-P9
Aga-Mir-317
Agr-Mir-317
Bge-Mir-317
Csc-Mir-317-P17
Csc-Mir-317-P18
Cte-Mir-317
Dan-Mir-317
Dgr-Mir-317-P3
Dgr-Mir-317-P4
Dlo-Mir-317
Dma-Mir-317
Dme-Mir-317
Dmo-Mir-317
Dpu-Mir-317
Dsi-Mir-317
Dya-Mir-317
Eba-Mir-317
Efe-Mir-317-P5
Efe-Mir-317-P6
Efe-Mir-317-P7
Esc-Mir-317
Gpa-Mir-317
Hme-Mir-317
Hru-Mir-317
Isc-Mir-317
Lan-Mir-317-P10
Lan-Mir-317-P11
Lgi-Mir-317
Lhy-Mir-317
Llo-Mir-317
Lpo-Mir-317-P12
Lpo-Mir-317-P13
Mgi-Mir-317-P1
Mgi-Mir-317-P2
Mom-Mir-317
Npo-Mir-317
Obi-Mir-317
Ofu-Mir-317
Ovu-Mir-317
Pau-Mir-317
Pca-Mir-317
Pdu-Mir-317
Rph-Mir-317
Snu-Mir-317
Tca-Mir-317
Tur-Mir-317
War-Mir-317
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (PVE_manual_microRNAloci) |
CM062288.1:328172886-328173146: 101-161 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGGUAACUUAUAUAUUUUUCAUGUGGACUAAGGUACCAUUCUGGGUUCGCAGUGAAUUGAAUUAUGUGAACACAGCUGGUGGUAUCUUGCUUGAUGUGAAAUAAAUCUACAGUAAACAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGGUAACUUAUAUAUU-- G C --| G GUGAAU
UUUCAUGU GA UAAGGUACCAUU CUG GUUCGCA \
AAAGUGUA UU GUUCUAUGGUGG GAC CAAGUGU U
AGACAAAUGACAUCUAAAU G C UC^ A AUUAAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Pve-Mir-317_5p* |
mirBase accession | None |
Sequence |
0- AAGGUACCAUUCUGGGUUCGCA -22
Get sequence
|
Mature sequence |
Pve-Mir-317_3p |
mirBase accession | None |
Sequence |
37- UGAACACAGCUGGUGGUAUCUUGC -61
Get sequence
|