MirGeneDB 3.0
MirGeneDB ID

Csc-Mir-317-P17

Family name MIR-317 (all species)
Seed GAGUACC
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-317-P18 
Orthologues Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Cte-Mir-317  Dan-Mir-317  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Protostomia
Genome context
(GCF_000671375.1_CSC)		 NW_019384537.1: 174576-174635 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGUCUAUCGGCAGUUCCUGAGAAGGGGCUGAGUACCACUCUGAGUUCACAUGUUAGUCUGUUGUGAACACAGCUGGUGGUAUCUCAGUUACCUCCCAGACUACUUCGACUGUCUGAUC
Get precursor sequence
Structure
        10          20         30         40          50        
GUUGUCUAUCGGCAGUUC--   A A   -       -       --|  A       UGUUA 
                    CUG G AGG GGCUGAG UACCACU  CUG GUUCACA     \
                    GAC C UCC UUGACUC AUGGUGG  GAC CAAGUGU     G
CUAGUCUGUCAGCUUCAUCA   C -   A       U       UC^  A       UGUCU 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma
Mature sequence

Csc-Mir-317-P17_5p
mirBase accessionNone
Sequence 
0- UGAGUACCACUCUGAGUUCACA -22
Get sequence
Star sequence

Csc-Mir-317-P17_3p*
mirBase accessionNone
Sequence 
35- UGAACACAGCUGGUGGUAUCUCAGU -60
Get sequence