MirGeneDB 3.0
MirGeneDB ID

Hru-Mir-317

Family name MIR-317 (all species)
Seed GAACACA
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues
Orthologues Aae-Mir-317-P8  Aae-Mir-317-P9  Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Csc-Mir-317-P17  Csc-Mir-317-P18  Cte-Mir-317  Dan-Mir-317  Dgr-Mir-317-P3  Dgr-Mir-317-P4  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Efe-Mir-317-P5  Efe-Mir-317-P6  Efe-Mir-317-P7  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Isc-Mir-317  Lan-Mir-317-P10  Lan-Mir-317-P11  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Lpo-Mir-317-P12  Lpo-Mir-317-P13  Mgi-Mir-317-P1  Mgi-Mir-317-P2  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)		 JALGQA010000024.1: 7998742-7998801 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGGAUGCGGACUCCUGUCUGUGUUGGGGAGGGUACCAUGCCGUGUUCACAGUCUGACCACUUUGUGAACACAGCUGGUGGUAUCUUCUCGGAUAUGGACCUGACCUACAAUGACUUCU
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Structure
        10          20        30        40          50        
GAGGGAUGCGGACUCCU--         G             --| C         GUCUG 
                   GUCUGUGUU GGGAGGGUACCAU  GC GUGUUCACA     A
                   CAGGUAUAG CUCUUCUAUGGUG  CG CACAAGUGU     C
UCUUCAGUAACAUCCAGUC         G             GU^ A         UUCAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ha Ha
Star sequence

Hru-Mir-317_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGGUACCAUGCCGUGUUCACA -22
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Mature sequence

Hru-Mir-317_3p
mirBase accessionNone
Sequence 
36- UGAACACAGCUGGUGGUAUCUUCU -60
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