MirGeneDB ID | Lpo-Mir-317-P12 |
Family name |
MIR-317 (all species) |
Seed |
GAACACA |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-317-P13
|
Orthologues |
Aga-Mir-317
Agr-Mir-317
Bge-Mir-317
Cte-Mir-317
Dan-Mir-317
Dlo-Mir-317
Dma-Mir-317
Dme-Mir-317
Dmo-Mir-317
Dpu-Mir-317
Dsi-Mir-317
Dya-Mir-317
Eba-Mir-317
Esc-Mir-317
Gpa-Mir-317
Hme-Mir-317
Hru-Mir-317
Isc-Mir-317
Lgi-Mir-317
Lhy-Mir-317
Llo-Mir-317
Mom-Mir-317
Npo-Mir-317
Obi-Mir-317
Ofu-Mir-317
Ovu-Mir-317
Pau-Mir-317
Pca-Mir-317
Pdu-Mir-317
Pve-Mir-317
Rph-Mir-317
Snu-Mir-317
Tca-Mir-317
Tur-Mir-317
War-Mir-317
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666266.1: 394642-394701 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAAAGCUCCGGAUGGAACUUGGGAGUAGGCCGAGUACCACGCUGGGUUCACAUGGGACAAGCUUGUGAACACAGCUGGUGGUAUCUCAGUGUAACCCCAAAAUGGACAUCACCUUACACC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAAAGCUCCGGAUGGAAC-- AG G C - --| G UGGGA
UUGGG UA GC GAG UACCAC GCUG GUUCACA \
AACCC AU UG CUC AUGGUG CGAC CAAGUGU C
CCACAUUCCACUACAGGUAA CA G A U GU^ A UCGAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-317-P12_5p* |
mirBase accession | None |
Sequence |
0- CGAGUACCACGCUGGGUUCACA -22
Get sequence
|
Mature sequence |
Lpo-Mir-317-P12_3p |
mirBase accession | None |
Sequence |
35- UGAACACAGCUGGUGGUAUCUCAGU -60
Get sequence
|