MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-317

Family name MIR-317 (all species)
Seed GAACACA
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues
Orthologues Aae-Mir-317-P8  Aae-Mir-317-P9  Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Csc-Mir-317-P17  Csc-Mir-317-P18  Cte-Mir-317  Dan-Mir-317  Dgr-Mir-317-P3  Dgr-Mir-317-P4  Dlo-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Efe-Mir-317-P5  Efe-Mir-317-P6  Efe-Mir-317-P7  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lan-Mir-317-P10  Lan-Mir-317-P11  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Lpo-Mir-317-P12  Lpo-Mir-317-P13  Mgi-Mir-317-P1  Mgi-Mir-317-P2  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046180.1: 8460499-8460565 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAGGUGUGAAAUUUUCCACUCCAGGACGGGGAACCACCCUGCGUUCCCCUGUUACUUGAAUUAUCCAGGUGAACACAGCUGGUGGUAUCUCAGUCCUUGUGAUUUUGGAACAAACCUUCAUUUG
Get precursor sequence
Structure
        10            20        30         40           50        60 
AAAAAGGUGUGAAAUUUUC----   UCC     G    -      --   C    -| CUGUUACUU 
                       CAC   AGGAC GGGA ACCACC  CUG GUUC CC         \
                       GUG   UCCUG CUCU UGGUGG  GAC CAAG GG         G
GUUUACUUCCAAACAAGGUUUUA   U--     A    A      UC   A    U^ ACCUAUUAA 
     120       110         100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-317_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGGGAACCACCCUGCGUUCCC -21
Get sequence
Mature sequence

Dma-Mir-317_3p
mirBase accessionNone
Sequence 
42- UGAACACAGCUGGUGGUAUCUCAGU -67
Get sequence