MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-317-P7

Family name MIR-317 (all species)
Seed GAACACA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-317-P5  Efe-Mir-317-P6 
Orthologues Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Cte-Mir-317  Dan-Mir-317  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.130990: 1760-1827 [+]
Precursor
(pre-Mir +30nt flank)
GGUCGAGUAUUGUAACUGCUGGACGAGAAUCGAGGACCAUUGCUGUAUUCGCAUAACGUGUCUGGAAUGUCUGUGAACACAGCUGAUGGUAUCUCUUUUAUCGCUCUGGCGCUAAUCGUCUGCUCCGC
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Structure
        10         20         30         40         50        60  
GGUCGAGUAUUGUAACU-  UG  -   G  UC    -      -|    A      UAACGUGU 
                  GC  GA CGA AA  GAGG ACCAUU GCUGU UUCGCA        C
                  CG  CU GCU UU  CUCU UGGUAG CGACA AAGUGU        U
CGCCUCGUCUGCUAAUCG  GU  C   A  UU    A      U^    C      CUGUAAGG 
      120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Star sequence

Efe-Mir-317-P7_5p*
mirBase accessionNone
Sequence 
0- CGAGGACCAUUGCUGUAUUCGCA -23
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Mature sequence

Efe-Mir-317-P7_3p
mirBase accessionNone
Sequence 
43- UGAACACAGCUGAUGGUAUCUCUUU -68
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