MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-317-P5

Family name MIR-317 (all species)
Seed GAACACA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-317-P6  Efe-Mir-317-P7 
Orthologues Aga-Mir-317  Agr-Mir-317  Bge-Mir-317  Cte-Mir-317  Dan-Mir-317  Dlo-Mir-317  Dma-Mir-317  Dme-Mir-317  Dmo-Mir-317  Dpu-Mir-317  Dsi-Mir-317  Dya-Mir-317  Eba-Mir-317  Esc-Mir-317  Gpa-Mir-317  Hme-Mir-317  Hru-Mir-317  Isc-Mir-317  Lgi-Mir-317  Lhy-Mir-317  Llo-Mir-317  Mom-Mir-317  Npo-Mir-317  Obi-Mir-317  Ofu-Mir-317  Ovu-Mir-317  Pau-Mir-317  Pca-Mir-317  Pdu-Mir-317  Pve-Mir-317  Rph-Mir-317  Snu-Mir-317  Tca-Mir-317  Tur-Mir-317  War-Mir-317 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.557472: 631-689 [+]
Precursor
(pre-Mir +30nt flank)
UGGAAGAGAACGCCAACGCGUUAGAGGGCAGGGAAUCAGAGCUGUCUUCGCAUGCCACAGCGAGUGUGAACACAGCUGGUGAUAUCUCUUCCCUUUAUCGCUCAGUCAGCAUGCUGAUC
Get precursor sequence
Structure
        10         20        30          40        50        
UGGAAGAGAACGCCAAC-   U       C     -    G-|     C      UGCCA 
                  GCG UAGAGGG AGGGA AUCA  AGCUGU UUCGCA     C
                  CGC AUUUCCC UCUCU UAGU  UCGACA AAGUGU     A
CUAGUCGUACGACUGACU   U       U     A    GG^     C      GAGCG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Efe-Mir-317-P5_5p*
mirBase accessionNone
Sequence 
0- GGGAAUCAGAGCUGUCUUCGCA -22
Get sequence
Mature sequence

Efe-Mir-317-P5_3p
mirBase accessionNone
Sequence 
36- UGAACACAGCUGGUGAUAUCUCU -59
Get sequence