Mir-34-P11

MirGeneDB ID

Hme-Mir-34-P11

Family name

MIR-34 (all species)

Seed

GGCAGUG

Species

Longwing butterfly (Heliconius melpomene)

MiRBase ID

hme-mir-34-1

Paralogues

Hme-Mir-34-P12

Orthologues

Aae-Mir-34 Aga-Mir-34 Agr-Mir-34 Asu-Mir-34 Bge-Mir-34 Cbr-Mir-34 Cel-Mir-34 Cin-Mir-34 Cte-Mir-34 Dan-Mir-34 Dlo-Mir-34 Dma-Mir-34 Dme-Mir-34 Dmo-Mir-34 Dpu-Mir-34 Dsi-Mir-34 Dya-Mir-34 Efe-Mir-34 Esc-Mir-34 Gpa-Mir-34 Gsp-Mir-34 Hmi-Mir-34 Hru-Mir-34 Isc-Mir-34 Lgi-Mir-34 Lhy-Mir-34 Llo-Mir-34 Mgi-Mir-34 Mom-Mir-34 Npo-Mir-34 Obi-Mir-34 Ofu-Mir-34 Ovu-Mir-34 Pau-Mir-34 Pca-Mir-34 Pdu-Mir-34 Pfl-Mir-34 Pmi-Mir-34 Pve-Mir-34 Rph-Mir-34 Sko-Mir-34 Snu-Mir-34 Spu-Mir-34 Tca-Mir-34 Tur-Mir-34 War-Mir-34

Node of Origin (locus)

H. melpomene

Node of Origin (family)

Bilateria

Genome context
(Hmel_1)

HE667979: 380-438 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-34-P11)

Mir-34-P11 HE667979: 380-438 [-] Ensembl
Mir-277 HE667979: 12468-12551 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGCAGAGAGAAGUAUAGGUAGGCCACAGUGGCAGUGUGGUUAGCUGGUUGUUUAGUCACAGCAACAGCCAGUAACGCCACUGCCUCUGCGUCUUGCCUGAAGCCGCAAAAGAAAUCU

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Structure

        10          20        30        40        50         
GAAGCAGAGAGAAGUAU--|      CCA   U       UG    G         UAGU 
                   AGGUAGG   CAG GGCAGUG  GUUA CUGGUUGUU    C
                   UCCGUUC   GUC CCGUCAC  CAAU GACCGACAA    A
UCUAAAGAAAACGCCGAAG^      UGC   U       CG    -         CGAC 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Fe	Fe	Fe	Fe	Ma	Ma

Mature sequence

Hme-Mir-34-P11_5p

mirBase accession

MIMAT0024983

Sequence

0- UGGCAGUGUGGUUAGCUGGUUGUU -24

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Star sequence

Hme-Mir-34-P11_3p*

mirBase accession

None

Sequence

36- CAGCCAGUAACGCCACUGCCUCU -59

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