MirGeneDB ID | Rph-Mir-12611 |
Family name |
MIR-12611 (all species) |
Seed |
CGAUAAC |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
Heteroconchia
|
Node of Origin (family) |
Heteroconchia
|
Genome context (Ruditapes_GCA_009026015) |
CM018524.1: 2561619-2561676 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUGCAAGCCAGUAUCAAAGCGACAGAUAUUCGAUAACGACGAUCCGAGCACGUGUAAGGUAUUGUGUUCGGACUGUUGUUACCGAGUCUUUUUCUGCUUACUUCGUCAAAAUAUCAA
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUGCAAGCCAGUAUCA- -| C U A A GUGUA
AAGC GA AGA AUUCG UAACGACG UCCGAGCAC A
UUCG CU UUU UGAGC AUUGUUGU AGGCUUGUG G
AACUAUAAAACUGCUUCA U^ U C C C UUAUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Rph-Mir-12611_5p |
mirBase accession | None |
Sequence |
0- UCGAUAACGACGAUCCGAGCAC -22
Get sequence
|
Star sequence |
Rph-Mir-12611_3p* |
mirBase accession | None |
Sequence |
36- GUUCGGACUGUUGUUACCGAGU -58
Get sequence
|