| MirGeneDB ID | Rph-Mir-12611 |
|---|---|
| Family name | MIR-12611 (all species) |
| Seed | CGAUAAC |
| Species | Japanese carpet shell (Ruditapes philippinarum) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | Heteroconchia |
| Node of Origin (family) | Heteroconchia |
| Genome context (Ruditapes_GCA_009026015) |
CM018524.1: 2561619-2561676 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CUUGCAAGCCAGUAUCAAAGCGACAGAUAUUCGAUAACGACGAUCCGAGCACGUGUAAGGUAUUGUGUUCGGACUGUUGUUACCGAGUCUUUUUCUGCUUACUUCGUCAAAAUAUCAAGet precursor sequence |
| Structure | 10 20 30 40 50 CUUGCAAGCCAGUAUCA- -| C U A A GUGUA AAGC GA AGA AUUCG UAACGACG UCCGAGCAC A UUCG CU UUU UGAGC AUUGUUGU AGGCUUGUG G AACUAUAAAACUGCUUCA U^ U C C C UUAUG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Rph-Mir-12611_5p |
| mirBase accession | None |
| Sequence |
0- UCGAUAACGACGAUCCGAGCAC -22
Get sequence
|
| Star sequence | Rph-Mir-12611_3p* |
| mirBase accession | None |
| Sequence |
36- GUUCGGACUGUUGUUACCGAGU -58
Get sequence
|
