MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Ruditapes_GCA_009026015)		 QUSP01003331.1: 12246-12301 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCACGUGCUAAACUUAAGGGUUACGUGCUAACGGAUGACAGUUACCGCCUAUCGAUAUUCGAGAUCGGUGGGACUUUCGUUCGCUUGUAAGAACCCUAUGAUCAGCACAGCAUAAC
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Structure
        10           20        30        40        50        
UCACGUGCUAAACUUAA---|    ACG   UAA       C    A     U   GAUA 
                    GGGUU   UGC   CGGAUGA AGUU CCGCC AUC    \
                    CCCAA   AUG   GCUUGCU UCAG GGUGG UAG    U
CAAUACGACACGACUAGUAU^    GA-   UUC       U    -     C   AGCU 
    110       100        90         80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Rph-Mir-278_5p*
mirBase accessionNone
Sequence 
0- ACGGAUGACAGUUACCGCCUAUC -23
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Mature sequence

Rph-Mir-278_3p
mirBase accessionNone
Sequence 
34- UCGGUGGGACUUUCGUUCGCUU -56
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