MirGeneDB 3.0
MirGeneDB ID

Agr-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues
Orthologues Aae-Mir-278  Aga-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)		 JABBOT010000009.1: 15562042-15562097 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAAGCCAAAGAUCUGCUGCUUGUUGCCUCCGGAUGAAAGCCCUAACUAUCUGCUGACUGCGAUCGGUGGGACUUUCGUUCGUUUGCAAUGAACGGCGAAUUCAACAUUUCCUCU
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Structure
        10          20        30        40          50       
UGCAAGCCAAAGAUCUG--   C UG    CUC          -|  UA   -   UGCU 
                   CUG U  UUGC   CGGAUGAAAG CCC  ACU AUC    G
                   GGC A  AACG   GCUUGCUUUC GGG  UGG UAG    A
UCUCCUUUACAACUUAAGC   A GU    UUU          A^  --   C   CGUC 
    110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Le
Star sequence

Agr-Mir-278_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCGGAUGAAAGCCCUAACUAUC -22
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Mature sequence

Agr-Mir-278_3p
mirBase accessionNone
Sequence 
34- UCGGUGGGACUUUCGUUCGUUU -56
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