MirGeneDB 3.0
MirGeneDB ID

Pfl-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Pfl)		 LD346721.1: 447470-447531 [-]
Precursor
(pre-Mir +30nt flank)
CACACAUGUAGUACAAUGCGUCCCUUCUGUUGGAACGGAAAUCUCGCCUAAUCGUGAUUCAAAUCCCAGAUCGGUGGGACUUUCGUUCGUUUGGAAGGGAUGAUCAGACGGCCAGAGAAUCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
CACACAUGUAGUACAAUG--|          UUG        A       UA   GUGAUUC 
                    CGUCCCUUCUG   GAACGGAA UCUCGCC  AUC       \
                    GUAGGGAAGGU   CUUGCUUU AGGGUGG  UAG       A
ACUAAGAGACCGGCAGACUA^          UUG        C       C-   ACCCUAA 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Pfl-Mir-278_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGAACGGAAAUCUCGCCUAAUC -23
Get sequence
Mature sequence

Pfl-Mir-278_3p
mirBase accessionNone
Sequence 
40- UCGGUGGGACUUUCGUUCGUUU -62
Get sequence