MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-278-P4

Family name MIR-278 (all species)
Seed CGGUGGG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-278-P3  Lpo-Mir-278-P5 
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013667857.1: 36654-36714 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGUUAGCAGGAGGAAGAGUGGUGUUACAAUGGAUGAAAGUGCCACCUUGAUCGGGCAUUGAACGUGGUCGGUGGGAUUUUCGUCCGUCUGUACCGCUUCUUACACGACUCCGAUGAUAA
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Structure
        10         20        30         40        50        60 
CAAGUUAGCAGGAGGAA-   U    U    -|           G     UU    GGGCAU 
                  GAG GGUG UACA AUGGAUGAAAGU CCACC  GAUC      \
                  UUC UCGC AUGU UGCCUGCUUUUA GGUGG  CUGG      U
AAUAGUAGCCUCAGCACA   U    C    C^           G     --    UGCAAG 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-278-P4_5p* (predicted)
mirBase accessionNone
Sequence 
0- AUGGAUGAAAGUGCCACCUUGAUC -24
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Mature sequence

Lpo-Mir-278-P4_3p
mirBase accessionNone
Sequence 
39- UCGGUGGGAUUUUCGUCCGUCU -61
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