Mir-278

MirGeneDB ID

Cte-Mir-278

Family name

MIR-278 (all species)

Seed

CGGUGGG

Species

Polychaete worm (Capitella teleta)

MiRBase ID

cte-mir-278

Paralogues

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Efe-Mir-278-P1-v1 Efe-Mir-278-P1-v2 Efe-Mir-278-P2 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Llo-Mir-278-P6 Llo-Mir-278-P7 Lpo-Mir-278-P3 Lpo-Mir-278-P4 Lpo-Mir-278-P5 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Spu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Capitella_teleta_v1.0)

CAPTEscaffold_296: 103173-103248 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GCACUUAUUGACCUUGUACGCCCGUCGCCCACGAGCGAUUGUUUCUCGUGAUCACGUGUCUUUGUAUCAAUACAAAAUGGCGGAUCGGUGGGACUUUCGUUCGUUCGGGGCGGGCGGAUUAACUUCCGGUCAUGAU

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Structure

        10          20        30         40        50        60        
GCACUUAUUGACCUUGUA--|       G  C-        UU  UU UCG     ACGUGUCUUUGUAU 
                    CGCCCGUC CC  ACGAGCGA  GU  C   UGAUC              \
                    GCGGGCGG GG  UGCUUGCU  CA  G   GCUAG              C
UAGUACUGGCCUUCAAUUAG^       -  CU        UU  GG UG-     GCGGUAAAACAUAA 
    130       120       110        100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ea	Fe	Fe	La	La	Ma	Ma	To

Star sequence

Cte-Mir-278_5p*

mirBase accession

None

Sequence

0- ACGAGCGAUUGUUUCUCGUGAUC -23

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Mature sequence

Cte-Mir-278_3p

mirBase accession

MIMAT0009538

Sequence

54- UCGGUGGGACUUUCGUUCGUUC -76

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