Mir-278

MirGeneDB ID

Spu-Mir-278

Family name

MIR-278 (all species)

Seed

CGGUGGG

Species

Purple sea urchin (Strongylocentrotus purpuratus)

MiRBase ID

spu-mir-278

Paralogues

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Efe-Mir-278-P1-v1 Efe-Mir-278-P1-v2 Efe-Mir-278-P2 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Llo-Mir-278-P6 Llo-Mir-278-P7 Lpo-Mir-278-P3 Lpo-Mir-278-P4 Lpo-Mir-278-P5 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Spur_5.0)

AAGJ06000002.1: 25922652-25922716 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

ACAUGUCCCUGAUCAAACUGCCUCUUCUCCUGGAAUGAAAGCCUCGCCAAUCUGUCAUUGUUACUAAGCUAGGUCGGUGGGACUUUCGUUCGAUUAGAAGAUGGUAGAUACUAACUUCUAUUGAG

Get precursor sequence

Structure

        10         20         30        40        50        60  
ACAUGUCCCUGAUCAAA-     -|     CCUG         C      A   UGUCAUUGU 
                  CUGCC UCUUCU    GAAUGAAAG CUCGCC AUC         \
                  GAUGG AGAAGA    CUUGCUUUC GGGUGG UGG         U
GAGUUAUCUUCAAUCAUA     U^     UUAG         A      C   AUCGAAUCA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

32	Bl	Eg	Ga	Ov	Pl	To	To

Star sequence

Spu-Mir-278_5p*

mirBase accession

MIMAT0019163

Sequence

0- UGGAAUGAAAGCCUCGCCAAUC -22

Get sequence

Mature sequence

Spu-Mir-278_3p

mirBase accession

MIMAT0009674

Sequence

43- UCGGUGGGACUUUCGUUCGAUU -65

Get sequence