Mir-278-P1-v2

MirGeneDB ID

Efe-Mir-278-P1-v2

Family name

MIR-278 (all species)

Seed

UCGGUGG

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-278-P1-v1 Efe-Mir-278-P2

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Spu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

E. fetida

Node of Origin (family)

Bilateria

Genome context
(Efe_combined)

Efet.01.1652561: 479-543 [+]

Precursor
(pre-Mir +30nt flank)

AACGGGCAACGGUUUCUAAUUCUCGCCCUCACGGACGAAAGCCUCAGUUAGAUCUCUGGAGAGCUGUCUCAGAUCGGUGGGACUUUCGUUCGUCUGGGAGAGAAGGUUCGAACUUCAGACUUACC

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Structure

        10          20        30        40        50        60   
AACGGGCAACGGUUUCUAA--|    G   UC           C    GUUA     CUGGAGA 
                     UUCUC CCC  ACGGACGAAAG CUCA    GAUCU       \
                     AAGAG GGG  UGCUUGCUUUC GGGU    CUAGA       G
CCAUUCAGACUUCAAGCUUGG^    A   UC           A    GG--     CUCUGUC 
   120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Efe-Mir-278-P1-v2_5p*

mirBase accession

None

Sequence

0- ACGGACGAAAGCCUCAGUUAGAUCU -25

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Mature sequence

Efe-Mir-278-P1-v2_3p

mirBase accession

None

Sequence

42- AUCGGUGGGACUUUCGUUCGUCU -65

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