MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075497.1: 8438396-8438464 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGAACAUAAUGAUUUGAGGCAUCUGCUCAUGAACGACAUAUCCACACGACGAUCUUGUUAUUGAUUGAAACUGAUCGGUGGGAUAUUUCAUUCAUUAGCAAUAGAAAAUCUUCGAUAUGAACUUUAC
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Structure
        10        20          30        40        50        60     
UUUGAACAUAAUGAUUUGAGGCAUC--|   C     C  C      A   GA     UUGUUAUU 
                           UGCU AUGAA GA AUAUCC CAC  CGAUC        G
                           ACGA UACUU CU UAUAGG GUG  GCUAG        A
CAUUUCAAGUAUAGCUUCUAAAAGAUA^   U     A  U      -   --     UCAAAGUU 
       120       110       100        90         80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
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Star sequence

Ava-Mir-278_5p* (predicted)
mirBase accessionNone
Sequence 
0- AUGAACGACAUAUCCACACGACGAUC -26
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Mature sequence

Ava-Mir-278_3p
mirBase accessionNone
Sequence 
46- UCGGUGGGAUAUUUCAUUCAUUA -69
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