MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-278
Paralogues
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_60: 694705-694885 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCGAGUCAUUUUGAAGUGUUUUCGUCACCUCCGGACAAGAGUCUUCCAUCGGCCGUGUCCAUUUUUUCGACAAGAAUUCCCAUCUCUCGGCGACGGAGCAUCUUUUUGAAAUUACGAGUUAAUUAAAUAAAAAAGUUUUCUCUGUUUUCGAGAGACGGAAGUCUUGCACAAGAAAUUUAAAAAAACAGGUCGGUGGGACUUUCGUCCGUGUGUGAUGCACUUGACAACACCGCGCCAUUUU
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Structure
        10        20          30        40        50        60        70        80        90       100       110       120 
UCGAGUCAUUUUGAAGUGUUUU--|     CUC     A      UU         GUGUCCAUUUUUUCGACAAGAAUUCCCAUCUCUCGGCGACGGAGCAUCUUUUUGAAAUUACGAGUU 
                        CGUCAC   CGGAC AGAGUC  CCAUCGGCC                                                                  \
                        GUAGUG   GCCUG UUUCAG  GGUGGCUGG                                                                  A
UUUUACCGCGCCACAACAGUUCAC^     UGU     C      --         ACAAAAAAAUUUAAAGAACACGUUCUGAAGGCAGAGAGCUUUUGUCUCUUUUGAAAAAAUAAAUUA 
 .       230       220       210       200         190       180       170       160       150       140       130
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Dpu-Mir-278_5p*
mirBase accessionNone
Sequence 
0- CCGGACAAGAGUCUUCCAUCGGCC -24
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Mature sequence

Dpu-Mir-278_3p
mirBase accessionMIMAT0012653
Sequence 
159- UCGGUGGGACUUUCGUCCGUGU -181
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