MirGeneDB 2.1

MirGeneDB ID

Npo-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues
Orthologues Aae-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Cgi-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Hme-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Obi-Mir-278  Ovu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Sko-Mir-278  Sme-Mir-278  Spu-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_018389105_NPO)
JACATO010002233.1: 187893-187953 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGAAACACAUCACCACCGUUCGUUACGGCCGAAUGAAAGCCUCGUCAGAAUCUUGUUUGAUAAUUGAUCGGUGGGACUUUCGUUCGUUUGGAACGAGUGAUAUGACGUCGUGAUGACGC
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Structure
        10          20        30        40        50        60 
UUGGAAACACAUCACCAC--|       A  GC          C   GU A  A  UUGUUU 
                    CGUUCGUU CG  CGAAUGAAAG CUC  C GA UC      \
                    GUGAGCAA GU  GCUUGCUUUC GGG  G CU AG      G
CGCAGUAGUGCUGCAGUAUA^       G  UU          A   UG -  -  UUAAUA 
 .       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Npo-Mir-278_5p* (predicted)

mirBase accessionNone
Sequence
0- CCGAAUGAAAGCCUCGUCAGAAUC -24
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Mature sequence

Npo-Mir-278_3p (predicted)

mirBase accessionNone
Sequence
39- UCGGUGGGACUUUCGUUCGUUU -61
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