MirGeneDB 3.0
MirGeneDB ID

Isc-Mir-278

Family name MIR-278 (all species)
Seed CGGAUGA
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-278
Paralogues
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_016920785.2_ASM1692078v2_ISC)		 NW_024609846.1: 201524982-201525048 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGGCUUCUGCAUUAUAGGCUCUGAUGUGUCCGGAUGAAUUUCUCGCCUGGCCGUUUCCGGUCCCCCGGAACAGGUCGGUGGGAUUUUCGUCCGUUUACGUCAGGCCUACAACAACCGUUAGCAGAC
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Structure
        10           20        30        40        50        60   
UAGGCUUCUGCAUUAUA---|  U        UC        UU       U    GUUUCCGGU 
                    GGC CUGAUGUG  CGGAUGAA  UCUCGCC GGCC         C
                    CCG GACUGCAU  GCCUGCUU  AGGGUGG CUGG         C
CAGACGAUUGCCAACAACAU^  -        UU        UU       -    ACAAGGCCC 
     120       110        100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Mature sequence

Isc-Mir-278_5p
mirBase accessionNone
Sequence 
0- CCGGAUGAAUUUCUCGCCUGGCC -23
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Star sequence

Isc-Mir-278_3p*
mirBase accessionMIMAT0016930
Sequence 
45- UCGGUGGGAUUUUCGUCCGUUU -67
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