MirGeneDB ID | Gpa-Mir-278 |
Family name |
MIR-278 (all species) |
Seed |
CGGACGA |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-278
Aga-Mir-278
Agr-Mir-278
Ava-Mir-278
Bfl-Mir-278
Bge-Mir-278
Bla-Mir-278
Csc-Mir-278
Cte-Mir-278
Dan-Mir-278
Dgr-Mir-278
Dlo-Mir-278
Dma-Mir-278
Dme-Mir-278
Dmo-Mir-278
Dpu-Mir-278
Dsi-Mir-278
Dya-Mir-278
Eba-Mir-278
Efe-Mir-278-P1-v1
Efe-Mir-278-P1-v2
Efe-Mir-278-P2
Esc-Mir-278
Gsa-Mir-278
Hme-Mir-278
Hru-Mir-278
Isc-Mir-278
Lan-Mir-278
Lgi-Mir-278
Lhy-Mir-278
Llo-Mir-278-P6
Llo-Mir-278-P7
Lpo-Mir-278-P3
Lpo-Mir-278-P4
Lpo-Mir-278-P5
Mgi-Mir-278
Mom-Mir-278
Npo-Mir-278
Obi-Mir-278
Ofu-Mir-278
Ovu-Mir-278
Pau-Mir-278
Pca-Mir-278
Pcr-Mir-278
Pdu-Mir-278
Pfl-Mir-278
Pmi-Mir-278
Pve-Mir-278
Rph-Mir-278
Sko-Mir-278
Sme-Mir-278
Snu-Mir-278
Spu-Mir-278
Tur-Mir-278
War-Mir-278
Xbo-Mir-278
|
Node of Origin (locus) |
Bilateria
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Node of Origin (family) |
Bilateria
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Genome context (GpalI1) |
Scaffold50: 555937-555999 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUAUUGUUUGGUUAUAAUGGUACGGUGCGACCGGACGAUGGUUCACAACGACCGUUUUUUUCUAACAUUGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUAUUCAACGUAACUUAAUUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUAUUGUUUGGUUAUAA----| ACGG C U A A GUUUUUU
UGGU UGCGA CGGACGA GGUUC CA CGACC U
ACCG AUGUU GCCUGCU UCAGG GU GCUGG C
GUUAAUUCAAUGCAACUUAUU^ CA-- U U - G UUACAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | No |
Tissue expression
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Mature sequence |
Gpa-Mir-278_5p |
mirBase accession | None |
Sequence |
0- CCGGACGAUGGUUCACAACGACC -23
Get sequence
|
Co-mature sequence |
Gpa-Mir-278_3p |
mirBase accession | None |
Sequence |
41- UCGGUGGGACUUUCGUCCGUUU -63
Get sequence
|