MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000002.1: 55309988-55310046 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUUCUCUUCUGUGGGCUACUUGACACCUACGAAUGAAAUUCUCGACAGGGUCGAUUCACAAGCGAUCGGUGGGACUUUCGUUCGUUCGGGUUAAGUAGCGAAUCUCCUACCGUCAAC
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Structure
        10          20        30         40        50          
CAUUUCUCUUCUGUGGG--|        A  U-          U    G  AG    GAUUC 
                   CUACUUGAC CC  ACGAAUGAAA UCUC AC  GGUC     \
                   GAUGAAUUG GG  UGCUUGCUUU AGGG UG  CUAG     A
CAACUGCCAUCCUCUAAGC^        -  CU          C    -  G-    CGAAC 
       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-278_5p*
mirBase accessionNone
Sequence 
0- ACGAAUGAAAUUCUCGACAGGGUC -24
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Mature sequence

Pdu-Mir-278_3p
mirBase accessionNone
Sequence 
37- UCGGUGGGACUUUCGUUCGUUC -59
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