Mir-278-P3

MirGeneDB ID

Lpo-Mir-278-P3

Family name

MIR-278 (all species)

Seed

CGGUGGG

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-278-P4 Lpo-Mir-278-P5

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Spu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013667338.1: 20482-20543 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GGCAGCAGUGUCCCAAACAGUGUAAUGCGUCCGGACGAAGUUCUCACAACGGCCGUUAGGGUUUAUCAGGUCGGUGGGAUUUUCGUCCGUCUGUGUUGCAUUUGAAAAGUCAGCAUUUUCAU

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Structure

        10          20        30        40        50        60 
GGCAGCAGUGUCCCAAAC--|          UC         U      AA     GUUAGG 
                    AGUGUAAUGCG  CGGACGAAG UCUCAC  CGGCC      G
                    UUACGUUGUGU  GCCUGCUUU AGGGUG  GCUGG      U
UACUUUUACGACUGAAAAGU^          CU         U      --     ACUAUU 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-278-P3_5p*

mirBase accession

None

Sequence

0- CCGGACGAAGUUCUCACAACGGCC -24

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Mature sequence

Lpo-Mir-278-P3_3p

mirBase accession

None

Sequence

40- UCGGUGGGAUUUUCGUCCGUCU -62

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