MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-278
Paralogues
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000106_dd_Smes_g4_106: 1244692-1244760 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCUCUUUCUUCGGUCGUGAUCUUUGACUUCGAAUGCUAUUUUCACCAGAUGCUUGUUCAAGUUCAACAGUCAAGCUCGGUGGGAGUAACAUUCGAAAUUAAUUACGAUCAGUCAACAUUAAUAUCUA
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Structure
        10        20           30        40         50        60   
UGUCUCUUUCUUCGGUCGU    U---    C        C    UU    -| AUGCUUGUUCAA 
                   GAUC    UUGA UUCGAAUG UAUU  CACC AG            G
                   CUAG    AAUU AAGCUUAC AUGA  GUGG UC            U
AUCUAUAAUUACAACUGA-    CAUU    A        A    GG    C^ GAACUGACAACU 
       120        110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-278_5p*
mirBase accessionMIMAT0012121
Sequence 
0- UCGAAUGCUAUUUUCACCAGAU -22
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Mature sequence

Sme-Mir-278_3p
mirBase accessionMIMAT0004011
Sequence 
47- UCGGUGGGAGUAACAUUCGAAA -69
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