MirGeneDB 3.0
MirGeneDB ID

Aae-Mir-278

Family name MIR-278 (all species)
Seed CGGUGGG
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-278
Paralogues
Orthologues Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2  Efe-Mir-278-P2  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Llo-Mir-278-P6  Llo-Mir-278-P7  Lpo-Mir-278-P3  Lpo-Mir-278-P4  Lpo-Mir-278-P5  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Aaeg_L3)		 supercont1.16: 3596269-3596332 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAAUCUUAUCCUAAUGGUUCUGGUGCGAACGGACGAUAGUCUUCAGCGGCCGUGCAUUUGAUAGAAUUGGUCGGUGGGACUUUCGUCCGUUUGUAACCGCCGUUUGCGACGAGGGAUUCAAA
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Structure
        10            20         30        40        50        60  
UUCAAUCUUAUCCUAAU----|  UCU   -            U     U  G     GUGCAUUU 
                     GGU   GGU GCGAACGGACGA AGUCU CA CGGCC        \
                     CCG   CCA UGUUUGCCUGCU UCAGG GU GCUGG        G
AAACUUAGGGAGCAGCGUUUG^  ---   A            U     -  G     UUAAGAUA 
  120       110          100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Ge Ge So So To To To
Star sequence

Aae-Mir-278_5p*
mirBase accessionMIMAT0014237
Sequence 
0- ACGGACGAUAGUCUUCAGCGGCC -23
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Mature sequence

Aae-Mir-278_3p
mirBase accessionMIMAT0014238
Sequence 
42- UCGGUGGGACUUUCGUCCGUUU -64
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