MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-278-P2

Family name MIR-278 (all species)
Seed CGGUGGG
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-278-P1-v1  Efe-Mir-278-P1-v2 
Orthologues Aae-Mir-278  Aga-Mir-278  Agr-Mir-278  Ava-Mir-278  Bfl-Mir-278  Bge-Mir-278  Bla-Mir-278  Csc-Mir-278  Cte-Mir-278  Dan-Mir-278  Dgr-Mir-278  Dlo-Mir-278  Dma-Mir-278  Dme-Mir-278  Dmo-Mir-278  Dpu-Mir-278  Dsi-Mir-278  Dya-Mir-278  Eba-Mir-278  Esc-Mir-278  Gpa-Mir-278  Gsa-Mir-278  Hme-Mir-278  Hru-Mir-278  Isc-Mir-278  Lan-Mir-278  Lgi-Mir-278  Lhy-Mir-278  Mgi-Mir-278  Mom-Mir-278  Npo-Mir-278  Obi-Mir-278  Ofu-Mir-278  Ovu-Mir-278  Pau-Mir-278  Pca-Mir-278  Pcr-Mir-278  Pdu-Mir-278  Pfl-Mir-278  Pmi-Mir-278  Pve-Mir-278  Rph-Mir-278  Sko-Mir-278  Sme-Mir-278  Snu-Mir-278  Spu-Mir-278  Tur-Mir-278  War-Mir-278  Xbo-Mir-278 
Node of Origin (locus) E. fetida
Node of Origin (family) Bilateria
Genome context
(Efe_combined)		 Efet.01.249401: 3113-3172 [+]
Precursor
(pre-Mir +30nt flank)
GCCUGGUUCCUGGUCGGUUUUCUCGCCCGUACGAGCGAAUGUUCUCACGCGAUCUUAGAUUUGAAUGAUCGGUGGGAUUUUCGUUCGUUCUGGAGGUGGAACUCUCUCCGAACUCACGAG
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Structure
        10        20        30           40        50        60
GCCUGGUUCCUGGUCGGUU   U    CGU---|        UGU      G     UUAGA 
                   UUC CGCC      ACGAGCGAA   UCUCAC CGAUC     U
                   AAG GUGG      UGCUUGCUU   AGGGUG GCUAG     U
GAGCACUCAAGCCUCUCUC   -    AGGUCU^        UU-      -     UAAGU 
.       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Efe-Mir-278-P2_5p*
mirBase accessionNone
Sequence 
0- ACGAGCGAAUGUUCUCACGCGAUC -24
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Mature sequence

Efe-Mir-278-P2_3p
mirBase accessionNone
Sequence 
38- UCGGUGGGAUUUUCGUUCGUUC -60
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