Mir-278

MirGeneDB ID

Gsa-Mir-278

Family name

MIR-278 (all species)

Seed

UCGGUGG

Species

Russian doll killer (Gyrodactylus salaris)

MiRBase ID

gsa-mir-278

Paralogues

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Efe-Mir-278-P1-v1 Efe-Mir-278-P1-v2 Efe-Mir-278-P2 Esc-Mir-278 Gpa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Llo-Mir-278-P6 Llo-Mir-278-P7 Lpo-Mir-278-P3 Lpo-Mir-278-P4 Lpo-Mir-278-P5 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Spu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)

scf7180006947158: 2473-2533 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGGGAAUGAUUAGAGAUAAAGGGAGUUGGACAAGGGUCCUUCAACCGCUAAGUACCCAACAUUUGGUACUCGGUGGGAGUAUUUUUGUACAACUCAAUCUCUCAACAACUUUGGCUCUUG

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Structure

        10        20          30        40        50        60 
UGGGGAAUGAUUAGAGAUAAAGG--|     G        C    A    CUA    CCCAA 
                         GAGUUG ACAAGGGU CUUC ACCG   AGUA     C
                         CUCAAC UGUUUUUA GAGG UGGC   UCAU     A
GUUCUCGGUUUCAACAACUCUCUAA^     A        U    G    ---    GGUUU 
 .       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Gsa-Mir-278_5p*

mirBase accession

MIMAT0035294

Sequence

0- ACAAGGGUCCUUCAACCGCUAAGUA -25

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Mature sequence

Gsa-Mir-278_3p

mirBase accession

MIMAT0035295

Sequence

39- CUCGGUGGGAGUAUUUUUGUAC -61

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