| MirGeneDB ID | Rph-Mir-2722 |
|---|
| Family name |
MIR-2722 (all species) |
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| Seed |
GGCGCCG |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Agr-Mir-2722
Eba-Mir-2722
Esc-Mir-2722
Hru-Mir-2722
Lgi-Mir-2722
Lhy-Mir-2722
Mgi-Mir-2722
Mom-Mir-2722
Npo-Mir-2722
Obi-Mir-2722
Ovu-Mir-2722
Pve-Mir-2722
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| Node of Origin (locus) |
Mollusca
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| Node of Origin (family) |
Mollusca
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Genome context
(Ruditapes_GCA_009026015) |
CM018540.1: 44280437-44280494 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUAAGAUGGUUUUGCACUCACUGUACCAGAAAGGUGUUUCAUGGGCGCUACAGGGCAGUAAUCGUGGCGCCGUGGAAACAUCCUUCUCGUGCAGUGCAGAUAUCAACUGCUGUUUCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUUAAGAUGGUUUUGCA- -| C A AUG AGGGC
CU CACUGUAC AGAA GGUGUUUC GGCGCUAC A
GA GUGACGUG UCUU CUACAAAG CCGCGGUG G
UCUUUGUCGUCAACUAUA C^ C C GUG CUAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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| Star sequence |
Rph-Mir-2722_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAAGGUGUUUCAUGGGCGCUACA -23
Get sequence
|
|---|
| Mature sequence |
Rph-Mir-2722_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGGCGCCGUGGAAACAUCCUUCU -58
Get sequence
|
|---|
