MirGeneDB ID | Mgi-Mir-2722 |
Family name |
MIR-2722 (all species) |
Seed |
AAGGUGU |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Agr-Mir-2722
Eba-Mir-2722
Esc-Mir-2722
Hru-Mir-2722
Lgi-Mir-2722
Lhy-Mir-2722
Mom-Mir-2722
Npo-Mir-2722
Obi-Mir-2722
Ovu-Mir-2722
Pve-Mir-2722
Rph-Mir-2722
|
Node of Origin (locus) |
Mollusca
|
Node of Origin (family) |
Mollusca
|
Genome context (CGI_GCA_000297895.1) |
scaffold1347: 252941-252998 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGAAAAUCCAGCUGAUUAGAAUUUGUUGGAAAGGUGUUUCACAGGCGCUACAUUGGAGAUGACGUGGCGCCGUGUAAACACCUACCCGACAGGUCAGCAAUGACGUCAUUACCUUUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGAAAAUCCAGCUGAUUA---| A AA - A AUUGG
GA UUUGUUGG AGGUGUUU CAC GGCGCUAC A
CU GGACAGCC UCCACAAA GUG CCGCGGUG G
GUUUCCAUUACUGCAGUAACGA^ - CA U - CAGUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Mgi-Mir-2722_5p |
mirBase accession | None |
Sequence |
0- AAAGGUGUUUCACAGGCGCUAC -22
Get sequence
|
Co-mature sequence |
Mgi-Mir-2722_3p |
mirBase accession | None |
Sequence |
35- UGGCGCCGUGUAAACACCUACCC -58
Get sequence
|