| MirGeneDB ID | Ovu-Mir-2722 |
|---|
| Family name |
MIR-2722 (all species) |
|---|
| Seed |
GGCGCCG |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Agr-Mir-2722
Eba-Mir-2722
Esc-Mir-2722
Hru-Mir-2722
Lgi-Mir-2722
Lhy-Mir-2722
Mgi-Mir-2722
Mom-Mir-2722
Npo-Mir-2722
Obi-Mir-2722
Pve-Mir-2722
Rph-Mir-2722
|
|---|
| Node of Origin (locus) |
Mollusca
|
|---|
| Node of Origin (family) |
Mollusca
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01040067.1: 43455-43512 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGUUACUACUGGACAUUGUGUCGCCACAAGAGAGGUGUUUCAUGGGCGCUACACUGUUCUGAAAGUGGCGCCGUGUAAACAUCUAGCUUGUUGCGAAAAAUACUUCAUCGACUGAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGUUACUACUGGACAUUGUG-- C AG -| G ACUGU
UCGC ACAAG AGGUGUUU CAUGG CGCUAC U
AGCG UGUUC UCUACAAA GUGCC GCGGUG C
AGAAGUCAGCUACUUCAUAAAA U GA U^ - AAAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +2 on the 5p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Ovu-Mir-2722_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGGUGUUUCAUGGGCGCUACA -23
Get sequence
|
|---|
| Mature sequence |
Ovu-Mir-2722_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGGCGCCGUGUAAACAUCUAGCU -58
Get sequence
|
|---|
