| MirGeneDB ID | Rph-Mir-12612 |
|---|---|
| Family name | MIR-12612 (all species) |
| Seed | CUACCUG |
| Species | Japanese carpet shell (Ruditapes philippinarum) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | Heteroconchia |
| Node of Origin (family) | Heteroconchia |
| Genome context (Ruditapes_GCA_009026015) |
QUSP01001701.1: 75448-75505 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | AUGACGUAUGUUGUAUAUGACGGUUGUACGUCGUUGUUAUCACAGAUAUAGUGACGCUGAUUACACUCUACCUGUGUCAACAGCGACAUUUGCCCGUUUCUCUGACGUGUUCCAUUCAGet precursor sequence |
| Structure | 10 20 30 40 50 AUGACGUAUGUUGUAUAU--| UU UAC AU A U GACGC GACGG G GUCGUUGUU CACAG UA AGU U UUGCC U CAGCGACAA GUGUC AU UCA G ACUUACCUUGUGCAGUCUCU^ CG UUA CU C C CAUUA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Rph-Mir-12612_5p* |
| mirBase accession | None |
| Sequence |
0- UCGUUGUUAUCACAGAUAUAGU -22
Get sequence
|
| Mature sequence | Rph-Mir-12612_3p |
| mirBase accession | None |
| Sequence |
36- UCUACCUGUGUCAACAGCGACA -58
Get sequence
|
