| MirGeneDB ID | Rph-Novel-6 |
|---|---|
| Family name | RPH-NOVEL-6 (all species) |
| Seed | GUUUCAU |
| Species | Japanese carpet shell (Ruditapes philippinarum) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | R. philippinarum |
| Node of Origin (family) | R. philippinarum |
| Genome context (Ruditapes_GCA_009026015) |
CM018526.1: 52477957-52478015 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | UAUCUCAAAAUGUAGAAAAUGGGUUUAUAUAGCUCCAUGUCAUUGUGACAUUGUAAAACAAACAAAUGUUUCAUUGGCAUGGGGACUGCUGUAACCUUGAAUUGCAUCAUAUUAUGGAUGet precursor sequence |
| Structure | 10 20 30 40 50 UAUCUCAAAAUGUAGAAAAU-- U - -| U U GUAAA GGG UUAUA UAG CUCCAUGUCA UG GACAUU A UCC AAUGU GUC GGGGUACGGU AC UUGUAA C UAGGUAUUAUACUACGUUAAGU - C A^ U U ACAAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Rph-Novel-6_5p* |
| mirBase accession | None |
| Sequence |
0- AGCUCCAUGUCAUUGUGACAUU -22
Get sequence
|
| Mature sequence | Rph-Novel-6_3p |
| mirBase accession | None |
| Sequence |
36- UGUUUCAUUGGCAUGGGGACUGC -59
Get sequence
|
