MirGeneDB ID | Rph-Novel-6 |
Family name |
RPH-NOVEL-6 (all species) |
Seed |
GUUUCAU |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
R. philippinarum
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Node of Origin (family) |
R. philippinarum
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Genome context (Ruditapes_GCA_009026015) |
CM018526.1: 52477957-52478015 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UAUCUCAAAAUGUAGAAAAUGGGUUUAUAUAGCUCCAUGUCAUUGUGACAUUGUAAAACAAACAAAUGUUUCAUUGGCAUGGGGACUGCUGUAACCUUGAAUUGCAUCAUAUUAUGGAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUCUCAAAAUGUAGAAAAU-- U - -| U U GUAAA
GGG UUAUA UAG CUCCAUGUCA UG GACAUU A
UCC AAUGU GUC GGGGUACGGU AC UUGUAA C
UAGGUAUUAUACUACGUUAAGU - C A^ U U ACAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Star sequence |
Rph-Novel-6_5p* |
mirBase accession | None |
Sequence |
0- AGCUCCAUGUCAUUGUGACAUU -22
Get sequence
|
Mature sequence |
Rph-Novel-6_3p |
mirBase accession | None |
Sequence |
36- UGUUUCAUUGGCAUGGGGACUGC -59
Get sequence
|