MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(Ruditapes_GCA_009026015)
CM018527.1: 22888371-22888428 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUUCUACAAGAAUUCCUUAUCUACGGUGAUGCGUAGGCGUUGUGCACAGAUUUUAUAGUCUGACUGUGUAUUUCGUCUAAGCACCACUGAGAUGGGACACCAGCAGACGACAUUUU
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Structure
        10           20        30        40        50        
UAUUUCUACAAGAAUUC---|      A     A   G      UU        AUUUUA 
                    CUUAUCU CGGUG UGC UAGGCG  GUGCACAG      U
                    GGGUAGA GUCAC ACG AUCUGC  UAUGUGUC      A
UUUUACAGCAGACGACCACA^      -     C   A      UU        AGUCUG 
      110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Mir-242_5p

mirBase accessionNone
Sequence
0- AUGCGUAGGCGUUGUGCACAGA -22
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Star sequence

Rph-Mir-242_3p* (predicted)

mirBase accessionNone
Sequence
36- UGUGUAUUUCGUCUAAGCACCA -58
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