MirGeneDB 3.0
MirGeneDB ID

Pfl-Mir-242

Family name MIR-242 (all species)
Seed GCGUAGG
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Pfl)		 LD346879.1: 366091-366150 [+]
Precursor
(pre-Mir +30nt flank)
GGUCACGUGACAUGUCUCACUUCAAUGUGUUGCGUAGGCGUUGUGCACAGUGAUGUGUGGCCCGGUUCCUGUGCAUCUCUCCCACGCAUAUCGUUGGAGUGAAUUUUCAUCGGGGAAGAA
Get precursor sequence
Structure
        10          20        30        40        50         
GGUCACGUGACAUGUCU--|         UGU     A  CGUU        UGAUGUGU 
                   CACUUCAAUG   UGCGU GG    GUGCACAG        G
                   GUGAGGUUGC   ACGCA CC    UACGUGUC        G
AAGAAGGGGCUACUUUUAA^         UAU     C  UCUC        CUUGGCCC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Pfl-Mir-242_5p
mirBase accessionNone
Sequence 
0- UGCGUAGGCGUUGUGCACAGU -21
Get sequence
Star sequence

Pfl-Mir-242_3p* (predicted)
mirBase accessionNone
Sequence 
38- CUGUGCAUCUCUCCCACGCAUA -60
Get sequence