MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-242-v2

Family name MIR-242 (all species)
Seed UGCGUAG
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-242-v1 
Orthologues Agr-Mir-242  Bfl-Mir-242  Bko-Mir-242  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Lan-Mir-242  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pfl-Mir-242  Pmi-Mir-242  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(BraLan2)		 Sc0000023: 499950-500007 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGAUUCAGCCAUGAUAGCCGUCCAAGUGUUGCGUAGGCGUUGUGCACACUGUCUGACACAACCGUGUGUACCUCUCCUGCGGCACAUCUGGACGGCAUGUGCGCACAGCCAGCAGA
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Structure
        10          20        30         40        50        
GGGGAUUCAGCCAUGAUA--|       AG   U  -     CGUU        UGUCUG 
                    GCCGUCCA  UGU GC GUAGG    GUGCACAC      A
                    CGGCAGGU  ACA CG CGUCC    CAUGUGUG      C
AGACGACCGACACGCGUGUA^       CU   -  G     UCUC        CCAACA 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-242-v2_5p
mirBase accessionNone
Sequence 
0- UUGCGUAGGCGUUGUGCACACU -22
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Star sequence

Bla-Mir-242-v2_3p*
mirBase accessionNone
Sequence 
36- UGUGUACCUCUCCUGCGGCACA -58
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