MirGeneDB 3.0
MirGeneDB ID

Cte-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-242
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Sko-Mir-242  Snu-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_453: 18518-18578 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGUAAUCUCAUCCAAUCGUUAACCAUAGAUUUGCGUAGGUGUUGUGCACAGAGGUGUUACAUAAUAGUCUGUCCAUGACGCCUAGGCAUACCCGUGGUUGACGCAUCUUCAAAUUAACAAA
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Structure
        10          20        30        40        50          
CGUAAUCUCAUCCAAUC--|        AGAUU   G       UG  C     GGUGUUA 
                   GUUAACCAU     UGC UAGGUGU  UG ACAGA       \
                   CAGUUGGUG     ACG AUCCGCA  AC UGUCU       C
AAACAAUUAAACUUCUACG^        CCCAU   G       GU  C     GAUAAUA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ea Fe Fe La La Ma Ma To
Mature sequence

Cte-Mir-242_5p
mirBase accessionMIMAT0009680
Sequence 
0- UUGCGUAGGUGUUGUGCACAGA -22
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Star sequence

Cte-Mir-242_3p*
mirBase accessionNone
Sequence 
39- UGUCCAUGACGCCUAGGCAUAC -61
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