MirGeneDB ID | Pmi-Mir-242 |
Family name |
MIR-242 (all species) |
Seed |
UGCGUAG |
Species |
Bat starfish (Patiria miniata) |
MiRBase ID |
pmi-mir-242
|
Paralogues |
|
Orthologues |
Agr-Mir-242
Ava-Mir-242-P9
Ava-Mir-242-P10
Bfl-Mir-242
Bko-Mir-242
Bla-Mir-242-v1
Bla-Mir-242-v2
Bpl-Mir-242
Cbr-Mir-242
Cel-Mir-242
Cte-Mir-242
Eba-Mir-242
Hru-Mir-242-P3a
Hru-Mir-242-P3b
Lan-Mir-242
Lgi-Mir-242-P1
Lgi-Mir-242-P2
Lhy-Mir-242
Mgi-Mir-242
Mom-Mir-242
Nag-Mir-242-P7
Nag-Mir-242-P8
Npo-Mir-242
Ofu-Mir-242
Pau-Mir-242
Pca-Mir-242
Pdu-Mir-242-P4a
Pdu-Mir-242-P4b
Pdu-Mir-242-P4c
Pdu-Mir-242-P4d
Pfl-Mir-242
Pve-Mir-242-P5
Pve-Mir-242-P6
Rph-Mir-242
Sko-Mir-242
Snu-Mir-242
Spu-Mir-242
War-Mir-242
|
Node of Origin (locus) |
Nephrozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (Pmin1) |
JH788435.1: 1558-1620 [+]
|
Precursor (pre-Mir +30nt flank) |
GACAAAAGGACACGUUCUCACUGUAAGGUGUUGCGUAGGCGUUGUGCACAGUGUUGGUUUUUGAACGGGACUGUGCAUCUCACCCGCGCAAAGCAUUGCAGAGACCUCACAGCCGGAUACCUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GACAAAAGGACACGUUC--| A G G UA CGUU GUUGGUUU
UC CUGUAA GU UUGCG GG GUGCACAGU \
AG GACGUU CG AACGC CC UACGUGUCA U
CUCCAUAGGCCGACACUCC^ A A A GC ACUC GGGCAAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pmi-Mir-242_5p |
mirBase accession | MIMAT0032169 |
Sequence |
0- UUGCGUAGGCGUUGUGCACAGU -22
Get sequence
|
Star sequence |
Pmi-Mir-242_3p* |
mirBase accession | None |
Sequence |
41- UGUGCAUCUCACCCGCGCAAAG -63
Get sequence
|