MirGeneDB 3.0
MirGeneDB ID

Snu-Mir-242

Family name MIR-242 (all species)
Seed UGCGUAG
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues
Orthologues Agr-Mir-242  Ava-Mir-242-P9  Ava-Mir-242-P10  Bfl-Mir-242  Bko-Mir-242  Bla-Mir-242-v1  Bla-Mir-242-v2  Bpl-Mir-242  Cbr-Mir-242  Cel-Mir-242  Cte-Mir-242  Eba-Mir-242  Hru-Mir-242-P3a  Hru-Mir-242-P3b  Lan-Mir-242  Lgi-Mir-242-P1  Lgi-Mir-242-P2  Lhy-Mir-242  Mgi-Mir-242  Mom-Mir-242  Nag-Mir-242-P7  Nag-Mir-242-P8  Npo-Mir-242  Ofu-Mir-242  Pau-Mir-242  Pca-Mir-242  Pdu-Mir-242-P4a  Pdu-Mir-242-P4b  Pdu-Mir-242-P4c  Pdu-Mir-242-P4d  Pfl-Mir-242  Pmi-Mir-242  Pve-Mir-242-P5  Pve-Mir-242-P6  Rph-Mir-242  Sko-Mir-242  Spu-Mir-242  War-Mir-242 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)		 CM049306.1: 6216699-6216755 [-]
Precursor
(pre-Mir +30nt flank)
CCAGCCAACUCCUGUAAAGAAACGACUGGGUUGCGUAGGCGUUGUGCACGGAGUAAUCAUAAUUCCGUGUAUUCCGUCUGGGCAACCUGGUUGCUUCAACCUGCAGCAAACUCAGAA
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Structure
        10          20        30        40        50        
CCAGCCAACUCCUGUAAA--|  A    UG      G      UU         GUAAU 
                    GAA CGAC  GGUUGC UAGGCG  GUGCACGGA     \
                    CUU GUUG  CCAACG GUCUGC  UAUGUGCCU     C
AAGACUCAAACGACGUCCAA^  C    GU      G      CU         UAAUA 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Snu-Mir-242_5p (predicted)
mirBase accessionNone
Sequence 
0- UUGCGUAGGCGUUGUGCACGGA -22
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Star sequence

Snu-Mir-242_3p* (predicted)
mirBase accessionNone
Sequence 
35- CGUGUAUUCCGUCUGGGCAACC -57
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